Resource Type:
Genetic Marker
Name:
MK005875 K3319
Identifier:
MK005875_K3319
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK005875 K3319, is adjacent to primer, K3319_X. |
| The genetic_marker, MK005875 K3319, is adjacent to primer, K3319_Y. |
| The genetic_marker, MK005875 K3319, is adjacent to primer, K3319_Common. |
| The genetic_marker, MK005875 K3319, is located in gene, DCAR_004447. |
| The genetic_marker, MK005875 K3319, is located in gene, LOC108204963. |
| The marker_locus, K3319, is an instance of genetic_marker, MK005875 K3319. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 J.Parsons Th. Br1091×HM1 | Chr1 | 12.717 | K3319 | MapViewer |
| 2016 80592 NG full map | Chr1 | 12.717 | K3319 | MapViewer |
| 2016 Integ NG bin map | CH1 | 67.164 | K3319 | MapViewer |
| 2016 Integ NG full map | CH1 | 63.763 | K3319 | MapViewer |
| 2016 80592 NG bin map | Chr1 | 12.717 | K3319 | MapViewer |
| 2015 Br1091×HM1 | Chr1 | 12.717 | K3319 | MapViewer |
Synonyms:
- MK005875
Sequence Coordinates:
DCARv2_Chr1:48121620..48121674+
View location in JBrowse:
Sequence:
TCACAATGGTTTGAAGTTAATCGTAAGCTTGCCATCARTATAGTGGAAGA
CAACAAATTTTATCCAAAATT
Sequences:
>MK005875_K3319 ID=MK005875_K3319; Name=MK005875 K3319; organism=Daucus carota; type=genetic_marker
TCACAATGGTTTGAAGTTAATCGTAAGCTTGCCATCARTATAGTGGAAGA
CAACAAATTTTATCCAAAATT
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
TCACAATGGTTTGAAGTTAATCGTAAGCTTGCCATCA
Three Prime Flanking Region:
TATAGTGGAAGACAACAAATTTTATCCAAAATT
SNP:
A/G