MK006022 K3466

Resource Type: 
Genetic Marker
Name: 
MK006022 K3466
Identifier: 
MK006022_K3466
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
  3. Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
  4. Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK006022 K3466, is adjacent to primer, K3466_X.
The genetic_marker, MK006022 K3466, is adjacent to primer, K3466_Y.
The genetic_marker, MK006022 K3466, is adjacent to primer, K3466_Common.
The genetic_marker, MK006022 K3466, is located in gene, DCAR_029743.
The genetic_marker, MK006022 K3466, is located in gene, LOC108202715.
The marker_locus, K3466, is an instance of genetic_marker, MK006022 K3466.
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MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2014 J.Parsons Th. Fig_3.5Chr928.415K3466MapViewer
2014 J.Parsons Th. Fig_2.4Chr928.415K3466MapViewer
2016 Integ NG bin mapCH921.419K3466MapViewer
2016 Integ NG full mapCH919.606K3466MapViewer
2016 70349 NG full mapChr923.719K3466MapViewer
2014 J.Parsons Th. Br1091×HM1Chr923.632K3466MapViewer
2016 80592 NG full mapChr923.632K3466MapViewer
2015 MB MergedChr928.415K3466MapViewer
2015 Br1091×HM1Chr923.632K3466MapViewer
2014 70349Chromosome_923.719K3466MapViewer
2016 80592 NG bin mapChr923.632K3466MapViewer
2016 70796 NG full mapChr919.65K3466MapViewer
Synonyms: 
  • MK006022
Sequence Coordinates: 
DCARv2_Chr9:12897195..12897248-
View location in JBrowse: 
Sequence: 
GTGAAAACGACTCTTTGGTGTATCCTCCATTTGAATTYTTAGCATCTTCA
TCTCCCTCTATTATTACCGAG
Sequences: 
>MK006022_K3466 ID=MK006022_K3466; Name=MK006022 K3466; organism=Daucus carota; type=genetic_marker
GTGAAAACGACTCTTTGGTGTATCCTCCATTTGAATTYTTAGCATCTTCA
TCTCCCTCTATTATTACCGAG
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
GTGAAAACGACTCTTTGGTGTATCCTCCATTTGAATT
Three Prime Flanking Region: 
TTAGCATCTTCATCTCCCTCTATTATTACCGAG
SNP: 
C/T