Resource Type:
Genetic Marker
Name:
MK006352 K3796
Identifier:
MK006352_K3796
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK006352 K3796, is adjacent to primer, K3796_X. |
| The genetic_marker, MK006352 K3796, is adjacent to primer, K3796_Y. |
| The genetic_marker, MK006352 K3796, is adjacent to primer, K3796_Common. |
| The genetic_marker, MK006352 K3796, is located in gene, DCAR_004679. |
| The genetic_marker, MK006352 K3796, is located in gene, LOC108210056. |
| The marker_locus, K3796, is an instance of genetic_marker, MK006352 K3796. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 Integ NG bin map | CH1 | 75.892 | K3796 | MapViewer |
| 2016 70796 NG bin map | Chr1 | 61.893 | K3796 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr1 | 74.562 | K3796 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr1 | 74.562 | K3796 | MapViewer |
| 2016 80592 NG bin map | Chr1 | 3.709 | K3796 | MapViewer |
| 2015 Br1091×HM1 | Chr1 | 3.709 | K3796 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1 | Chr1 | 3.709 | K3796 | MapViewer |
| 2015 MB Merged | Chr1 | 74.562 | K3796 | MapViewer |
| 2016 Integ NG full map | CH1 | 73.973 | K3796 | MapViewer |
| 2016 80592 NG full map | Chr1 | 3.709 | K3796 | MapViewer |
| 2016 70796 NG full map | Chr1 | 61.893 | K3796 | MapViewer |
Synonyms:
- MK006352
Sequence Coordinates:
DCARv2_Chr1:50379196..50379248+
View location in JBrowse:
Sequence:
TCCGGTCACAGTCCATAACGTTACCATTAACCTTCTGYGCAACTCTGTCA
ATCATTCTCCACATACCGATM
Sequences:
>MK006352_K3796 ID=MK006352_K3796; Name=MK006352 K3796; organism=Daucus carota; type=genetic_marker
TCCGGTCACAGTCCATAACGTTACCATTAACCTTCTGYGCAACTCTGTCA
ATCATTCTCCACATACCGATM
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
TCCGGTCACAGTCCATAACGTTACCATTAACCTTCTG
Three Prime Flanking Region:
GCAACTCTGTCAATCATTCTCCACATACCGATM
SNP:
C/T