Resource Type:
Genetic Marker
Name:
MK006443 K3887
Identifier:
MK006443_K3887
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK006443 K3887, is adjacent to primer, K3887_X. |
| The genetic_marker, MK006443 K3887, is adjacent to primer, K3887_Y. |
| The genetic_marker, MK006443 K3887, is adjacent to primer, K3887_Common. |
| The genetic_marker, MK006443 K3887, is located in gene, DCAR_019515. |
| The genetic_marker, MK006443 K3887, is located in gene, LOC108223691. |
| The marker_locus, K3887, is an instance of genetic_marker, MK006443 K3887. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 Integ NG bin map | CH5 | 59.772 | K3887 | MapViewer |
| 2016 Integ NG full map | CH5 | 61.851 | K3887 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr5 | 49.16 | K3887 | MapViewer |
| 2016 70796 NG full map | Chr5 | 4.606 | K3887 | MapViewer |
| 2014 J.Parsons Th. Fig_4.4 | F2_Chr5 | 48.55 | K3887 | MapViewer |
| 2016 80592 NG bin map | Chr5 | 47.086 | K3887 | MapViewer |
| 2016 80592 NG full map | Chr5 | 47.086 | K3887 | MapViewer |
| 2015 MB Merged | Chr5 | 49.16 | K3887 | MapViewer |
| 2015 Br1091×HM1 | Chr5 | 47.086 | K3887 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1 | Chr5 | 47.086 | K3887 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr5 | 49.16 | K3887 | MapViewer |
Synonyms:
- MK006443
Sequence Coordinates:
DCARv2_Chr5:39683773..39683851+
View location in JBrowse:
Sequence:
CAAATTTACATATAGTGAACCGAAGAAAAAATATTTCWGTTGTTGGAGCT
GTCCCTCGTACATTTTCTACT
Sequences:
>MK006443_K3887 ID=MK006443_K3887; Name=MK006443 K3887; organism=Daucus carota; type=genetic_marker
CAAATTTACATATAGTGAACCGAAGAAAAAATATTTCWGTTGTTGGAGCT
GTCCCTCGTACATTTTCTACT
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
CAAATTTACATATAGTGAACCGAAGAAAAAATATTTC
Three Prime Flanking Region:
GTTGTTGGAGCTGTCCCTCGTACATTTTCTACT
SNP:
A/T