Resource Type:
Genetic Marker
Name:
MK006483 K3927
Identifier:
MK006483_K3927
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK006483 K3927, is adjacent to primer, K3927_X. |
| The genetic_marker, MK006483 K3927, is adjacent to primer, K3927_Y. |
| The genetic_marker, MK006483 K3927, is adjacent to primer, K3927_Common. |
| The genetic_marker, MK006483 K3927, is adjacent to gene, DCAR_022476. |
| The genetic_marker, MK006483 K3927, is located in gene, LOC108227918. |
| The marker_locus, K3927, is an instance of genetic_marker, MK006483 K3927. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 Integ NG bin map | CH6 | 47.503 | K3927 | MapViewer |
| 2016 Integ NG full map | CH6 | 51.153 | K3927 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr6 | 45.775 | K3927 | MapViewer |
| 2015 Br1091×HM1 | Chr6 | 14.541 | K3927 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr6 | 45.775 | K3927 | MapViewer |
| 2016 70796 NG bin map | Chr6 | 45.414 | K3927 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1 | Chr6 | 14.541 | K3927 | MapViewer |
| 2015 SFF×HM2 | Chr6 | 41.864 | K3927 | MapViewer |
| 2016 80592 NG full map | Chr6 | 14.541 | K3927 | MapViewer |
| 2014 J.Parsons Th. SFF×HM2 | Chr6 | 41.864 | K3927 | MapViewer |
| 2016 70796 NG full map | Chr6 | 45.414 | K3927 | MapViewer |
| 2016 80592 NG bin map | Chr6 | 14.541 | K3927 | MapViewer |
| 2015 MB Merged | Chr6 | 45.775 | K3927 | MapViewer |
Synonyms:
- MK006483
Sequence Coordinates:
DCARv2_Chr6:11821054..11821100-
View location in JBrowse:
Sequence:
TCCTCAAGTGTGTAAGAGAGCAAAGGCTGGGTTGAGAWTATCTCATTTAT
TAGCGGACTTTGCTGCCTCMT
Sequences:
>MK006483_K3927 ID=MK006483_K3927; Name=MK006483 K3927; organism=Daucus carota; type=genetic_marker
TCCTCAAGTGTGTAAGAGAGCAAAGGCTGGGTTGAGAWTATCTCATTTAT
TAGCGGACTTTGCTGCCTCMT
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
TCCTCAAGTGTGTAAGAGAGCAAAGGCTGGGTTGAGA
Three Prime Flanking Region:
TATCTCATTTATTAGCGGACTTTGCTGCCTCMT
SNP:
A/T