Resource Type:
Genetic Marker
Name:
MK006618 K4062
Identifier:
MK006618_K4062
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK006618 K4062, is adjacent to primer, K4062_X. |
| The genetic_marker, MK006618 K4062, is adjacent to primer, K4062_Y. |
| The genetic_marker, MK006618 K4062, is adjacent to primer, K4062_Common. |
| The genetic_marker, MK006618 K4062, is located in gene, DCAR_029117. |
| The genetic_marker, MK006618 K4062, is located in gene, LOC108200762. |
| The marker_locus, K4062, is an instance of genetic_marker, MK006618 K4062. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 J.Parsons Th. Fig_3.5 | Chr9 | 8.344 | K4062 | MapViewer |
| 2016 70796 NG full map | Chr9 | 4.89 | K4062 | MapViewer |
| 2016 80592 NG bin map | Chr9 | 4.176 | K4062 | MapViewer |
| 2016 80592 NG full map | Chr9 | 4.176 | K4062 | MapViewer |
| 2016 Integ NG bin map | CH9 | 4.674 | K4062 | MapViewer |
| 2015 Br1091×HM1 | Chr9 | 4.176 | K4062 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1 | Chr9 | 4.176 | K4062 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr9 | 8.344 | K4062 | MapViewer |
| 2016 Integ NG full map | CH9 | 3.501 | K4062 | MapViewer |
| 2015 MB Merged | Chr9 | 8.344 | K4062 | MapViewer |
Synonyms:
- MK006618
Sequence Coordinates:
DCARv2_Chr9:1888730..1888786+
View location in JBrowse:
Sequence:
CATCATATAAATAGTCTTAATAATTTTCTCTCGCCTCKTAAACTCTGATT
ATTACACACAACTCCACTCCC
Sequences:
>MK006618_K4062 ID=MK006618_K4062; Name=MK006618 K4062; organism=Daucus carota; type=genetic_marker
CATCATATAAATAGTCTTAATAATTTTCTCTCGCCTCKTAAACTCTGATT
ATTACACACAACTCCACTCCC
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
CATCATATAAATAGTCTTAATAATTTTCTCTCGCCTC
Three Prime Flanking Region:
TAAACTCTGATTATTACACACAACTCCACTCCC
SNP:
G/T