Resource Type:
Genetic Marker
Name:
MK003856 K1300
Identifier:
MK003856_K1300
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK003856 K1300, is adjacent to primer, K1300_X. |
| The genetic_marker, MK003856 K1300, is adjacent to primer, K1300_Y. |
| The genetic_marker, MK003856 K1300, is adjacent to primer, K1300_Common. |
| The genetic_marker, MK003856 K1300, is located in gene, DCAR_002110. |
| The genetic_marker, MK003856 K1300, is located in gene, LOC108227698. |
| The marker_locus, K1300, is an instance of genetic_marker, MK003856 K1300. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 70349 NG full map | Chr1 | 50.33 | K1300 | MapViewer |
| 2016 Integ NG full map | CH1 | 43.274 | K1300 | MapViewer |
| 2016 70349 NG bin map | Chr1 | 50.33 | K1300 | MapViewer |
| 2016 80592 NG full map | Chr1 | 32.297 | K1300 | MapViewer |
| 2016 70796 NG full map | Chr1 | 23.857 | K1300 | MapViewer |
| 2014 70349 | Chromosome_1 | 50.33 | K1300 | MapViewer |
| 2016 Integ NG bin map | CH1 | 43.3 | K1300 | MapViewer |
Synonyms:
- MK003856
Sequence Coordinates:
DCARv2_Chr1:25403013..25403059+
View location in JBrowse:
Sequence:
ACTACTGTGACTATTGCGACAAGGAGTTCCAGGACACKGCTTATGCCAGA
AAGAGACATCTCCAGAGCMTT
Sequences:
>MK003856_K1300 ID=MK003856_K1300; Name=MK003856 K1300; organism=Daucus carota; type=genetic_marker
ACTACTGTGACTATTGCGACAAGGAGTTCCAGGACACKGCTTATGCCAGA
AAGAGACATCTCCAGAGCMTT
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
ACTACTGTGACTATTGCGACAAGGAGTTCCAGGACAC
Three Prime Flanking Region:
GCTTATGCCAGAAAGAGACATCTCCAGAGCMTT
SNP:
G/T