Resource Type:
Genetic Marker
Name:
MK004220 K1664
Identifier:
MK004220_K1664
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK004220 K1664, is adjacent to primer, K1664_X. |
| The genetic_marker, MK004220 K1664, is adjacent to primer, K1664_Y. |
| The genetic_marker, MK004220 K1664, is adjacent to primer, K1664_Common. |
| The genetic_marker, MK004220 K1664, is located in gene, DCAR_003423. |
| The genetic_marker, MK004220 K1664, is located in gene, LOC108204409. |
| The marker_locus, K1664, is an instance of genetic_marker, MK004220 K1664. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 70349 NG bin map | Chr1 | 63.012 | K1664 | MapViewer |
| 2016 80592 NG full map | Chr1 | 23.56 | K1664 | MapViewer |
| 2016 70349 NG full map | Chr1 | 63.012 | K1664 | MapViewer |
| 2014 70349 | Chromosome_1 | 63.012 | K1664 | MapViewer |
| 2016 Integ NG full map | CH1 | 51.997 | K1664 | MapViewer |
| 2016 Integ NG bin map | CH1 | 54.606 | K1664 | MapViewer |
Synonyms:
- MK004220
Sequence Coordinates:
DCARv2_Chr1:38747878..38747925+
View location in JBrowse:
Sequence:
TAGCGGGTTTACAAATAGGGTGATTGCAAGGGAGAATRGAGAAAGTTGAT
GAGAGCGCAGGATCAAACGAC
Sequences:
>MK004220_K1664 ID=MK004220_K1664; Name=MK004220 K1664; organism=Daucus carota; type=genetic_marker
TAGCGGGTTTACAAATAGGGTGATTGCAAGGGAGAATRGAGAAAGTTGAT
GAGAGCGCAGGATCAAACGAC
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
TAGCGGGTTTACAAATAGGGTGATTGCAAGGGAGAAT
Three Prime Flanking Region:
GAGAAAGTTGATGAGAGCGCAGGATCAAACGAC
SNP:
A/G