MK004428 K1872

Resource Type: 
Genetic Marker
Name: 
MK004428 K1872
Identifier: 
MK004428_K1872
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK004428 K1872, is adjacent to primer, K1872_X.
The genetic_marker, MK004428 K1872, is adjacent to primer, K1872_Y.
The genetic_marker, MK004428 K1872, is adjacent to primer, K1872_Common.
The genetic_marker, MK004428 K1872, is located in gene, DCAR_012360.
The genetic_marker, MK004428 K1872, is located in gene, LOC108215227.
The marker_locus, K1872, is an instance of genetic_marker, MK004428 K1872.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 Integ NG full mapCH367.324K1872MapViewer
2014 70349Chromosome_313.614K1872MapViewer
2016 70349 NG full mapChr313.614K1872MapViewer
Synonyms: 
  • MK004428
Sequence Coordinates: 
DCARv2_Chr3:46220169..46220223-
View location in JBrowse: 
DCARv2_Chr3:46220169..46220223-
Sequence: 
AAAACCTTCAGAGTCATGACAACAATGAAATTTATGARAAGTCTGTGAAA
CTTCTCGAAACATATTGGTTA
Sequences: 
>MK004428_K1872 ID=MK004428_K1872; Name=MK004428 K1872; organism=Daucus carota; type=genetic_marker
AAAACCTTCAGAGTCATGACAACAATGAAATTTATGARAAGTCTGTGAAA
CTTCTCGAAACATATTGGTTA
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
AAAACCTTCAGAGTCATGACAACAATGAAATTTATGA
Three Prime Flanking Region: 
AAGTCTGTGAAACTTCTCGAAACATATTGGTTA
SNP: 
A/G