MK005928 K3372

Resource Type: 
Genetic Marker
Name: 
MK005928 K3372
Identifier: 
MK005928_K3372
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK005928 K3372, is adjacent to primer, K3372_X.
The genetic_marker, MK005928 K3372, is adjacent to primer, K3372_Y.
The genetic_marker, MK005928 K3372, is adjacent to primer, K3372_Common.
The genetic_marker, MK005928 K3372, is located in gene, DCAR_012252.
The genetic_marker, MK005928 K3372, is located in gene, LOC108211259.
The marker_locus, K3372, is an instance of genetic_marker, MK005928 K3372.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 Integ NG bin mapCH367.778K3372MapViewer
2016 Integ NG full mapCH365.649K3372MapViewer
2016 70349 NG full mapChr315.336K3372MapViewer
2016 70349 NG bin mapChr315.336K3372MapViewer
2014 70349Chromosome_315.336K3372MapViewer
Synonyms: 
  • MK005928
Sequence Coordinates: 
DCARv2_Chr3:45089818..45089867+
View location in JBrowse: 
DCARv2_Chr3:45089818..45089867+
Sequence: 
TCRCTAWGGACCATTCCACTGTTAGGGTAGTTGTCCARCACTACTGTCTG
ATACTGCTGTTGACGTGCTTC
Sequences: 
>MK005928_K3372 ID=MK005928_K3372; Name=MK005928 K3372; organism=Daucus carota; type=genetic_marker
TCRCTAWGGACCATTCCACTGTTAGGGTAGTTGTCCARCACTACTGTCTG
ATACTGCTGTTGACGTGCTTC
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
TCRCTAWGGACCATTCCACTGTTAGGGTAGTTGTCCA
Three Prime Flanking Region: 
CACTACTGTCTGATACTGCTGTTGACGTGCTTC
SNP: 
A/G