MK002967 K0411

Resource Type: 
Genetic Marker
Name: 
MK002967 K0411
Identifier: 
MK002967_K0411
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK002967 K0411, is adjacent to primer, K0411_X.
The genetic_marker, MK002967 K0411, is adjacent to primer, K0411_Y.
The genetic_marker, MK002967 K0411, is adjacent to primer, K0411_Common.
The genetic_marker, MK002967 K0411, is located in gene, DCAR_011297.
The genetic_marker, MK002967 K0411, is located in gene, LOC108215423.
The marker_locus, K0411, is an instance of genetic_marker, MK002967 K0411.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70349 NG bin mapChr328.893K0411MapViewer
2014 70349Chromosome_328.893K0411MapViewer
2016 Integ NG bin mapCH355.233K0411MapViewer
2016 Integ NG full mapCH353.227K0411MapViewer
2016 70349 NG full mapChr328.893K0411MapViewer
Synonyms: 
  • MK002967
Sequence Coordinates: 
DCARv2_Chr3:34347951..34348001+
View location in JBrowse: 
DCARv2_Chr3:34347951..34348001+
Sequence: 
TTGATRCTGGGYCAAATGTTCCAGCTCGTGGCAACACRAAATTGATGAAA
CGAATATGTTTTGGTGCTTCG
Sequences: 
>MK002967_K0411 ID=MK002967_K0411; Name=MK002967 K0411; organism=Daucus carota; type=genetic_marker
TTGATRCTGGGYCAAATGTTCCAGCTCGTGGCAACACRAAATTGATGAAA
CGAATATGTTTTGGTGCTTCG
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
TTGATRCTGGGYCAAATGTTCCAGCTCGTGGCAACAC
Three Prime Flanking Region: 
AAATTGATGAAACGAATATGTTTTGGTGCTTCG
SNP: 
A/G