MK006332 K3776

Resource Type: 
Genetic Marker
Name: 
MK006332 K3776
Identifier: 
MK006332_K3776
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK006332 K3776, is adjacent to primer, K3776_X.
The genetic_marker, MK006332 K3776, is adjacent to primer, K3776_Y.
The genetic_marker, MK006332 K3776, is adjacent to primer, K3776_Common.
The genetic_marker, MK006332 K3776, is adjacent to gene, DCAR_011275.
The genetic_marker, MK006332 K3776, is located in gene, LOC108214352.
The marker_locus, K3776, is an instance of genetic_marker, MK006332 K3776.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70349 NG bin mapChr329.211K3776MapViewer
2014 70349Chromosome_329.211K3776MapViewer
2016 Integ NG full mapCH352.978K3776MapViewer
2016 70349 NG full mapChr329.211K3776MapViewer
2016 Integ NG bin mapCH354.953K3776MapViewer
Synonyms: 
  • MK006332
Sequence Coordinates: 
DCARv2_Chr3:34195111..34195156+
View location in JBrowse: 
DCARv2_Chr3:34195111..34195156+
Sequence: 
CAGAAACAGCTKGAGCAGCCTCAAGTGAGTGGCTTTCYTGATGGGATTCA
ATGGTTGGAGCCATGGGAAGT
Sequences: 
>MK006332_K3776 ID=MK006332_K3776; Name=MK006332 K3776; organism=Daucus carota; type=genetic_marker
CAGAAACAGCTKGAGCAGCCTCAAGTGAGTGGCTTTCYTGATGGGATTCA
ATGGTTGGAGCCATGGGAAGT
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
CAGAAACAGCTKGAGCAGCCTCAAGTGAGTGGCTTTC
Three Prime Flanking Region: 
TGATGGGATTCAATGGTTGGAGCCATGGGAAGT
SNP: 
C/T