Resource Type:
Genetic Marker
Name:
MK005672 K3116
Identifier:
MK005672_K3116
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK005672 K3116, is adjacent to primer, K3116_X. |
| The genetic_marker, MK005672 K3116, is adjacent to primer, K3116_Y. |
| The genetic_marker, MK005672 K3116, is adjacent to primer, K3116_Common. |
| The genetic_marker, MK005672 K3116, is located in gene, DCAR_011216. |
| The genetic_marker, MK005672 K3116, is located in gene, LOC108214110. |
| The marker_locus, K3116, is an instance of genetic_marker, MK005672 K3116. |
Synonyms:
- MK005672
Sequence Coordinates:
DCARv2_Chr3:33674773..33674828-
View location in JBrowse:
Sequence:
CACACATCCTTGTATTCATGAAATATGAGGAAGATGTYCCAACAACTGTC
ATCTTTTCATCATCCCCAGAA
Sequences:
>MK005672_K3116 ID=MK005672_K3116; Name=MK005672 K3116; organism=Daucus carota; type=genetic_marker
CACACATCCTTGTATTCATGAAATATGAGGAAGATGTYCCAACAACTGTC
ATCTTTTCATCATCCCCAGAA
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
CACACATCCTTGTATTCATGAAATATGAGGAAGATGT
Three Prime Flanking Region:
CCAACAACTGTCATCTTTTCATCATCCCCAGAA
SNP:
C/T