MK005672 K3116

Resource Type: 
Genetic Marker
Name: 
MK005672 K3116
Identifier: 
MK005672_K3116
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK005672 K3116, is adjacent to primer, K3116_X.
The genetic_marker, MK005672 K3116, is adjacent to primer, K3116_Y.
The genetic_marker, MK005672 K3116, is adjacent to primer, K3116_Common.
The genetic_marker, MK005672 K3116, is located in gene, DCAR_011216.
The genetic_marker, MK005672 K3116, is located in gene, LOC108214110.
The marker_locus, K3116, is an instance of genetic_marker, MK005672 K3116.
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MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 Integ NG full mapCH352.615K3116MapViewer
2014 70349Chromosome_329.572K3116MapViewer
2016 70349 NG full mapChr329.572K3116MapViewer
Synonyms: 
  • MK005672
Sequence Coordinates: 
DCARv2_Chr3:33674773..33674828-
View location in JBrowse: 
Sequence: 
CACACATCCTTGTATTCATGAAATATGAGGAAGATGTYCCAACAACTGTC
ATCTTTTCATCATCCCCAGAA
Sequences: 
>MK005672_K3116 ID=MK005672_K3116; Name=MK005672 K3116; organism=Daucus carota; type=genetic_marker
CACACATCCTTGTATTCATGAAATATGAGGAAGATGTYCCAACAACTGTC
ATCTTTTCATCATCCCCAGAA
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
CACACATCCTTGTATTCATGAAATATGAGGAAGATGT
Three Prime Flanking Region: 
CCAACAACTGTCATCTTTTCATCATCCCCAGAA
SNP: 
C/T