Resource Type:
Genetic Marker
Name:
MK006396 K3840
Identifier:
MK006396_K3840
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK006396 K3840, is adjacent to primer, K3840_X. |
| The genetic_marker, MK006396 K3840, is adjacent to primer, K3840_Y. |
| The genetic_marker, MK006396 K3840, is adjacent to primer, K3840_Common. |
| The genetic_marker, MK006396 K3840, is located in gene, DCAR_010999. |
| The genetic_marker, MK006396 K3840, is located in gene, LOC108214867. |
| The marker_locus, K3840, is an instance of genetic_marker, MK006396 K3840. |
Synonyms:
- MK006396
Sequence Coordinates:
DCARv2_Chr3:31271777..31271830-
View location in JBrowse:
Sequence:
AAGATRACATTTACTGAGGAGTTCCATTTTTCTTAAAYAATGCATATGCG
TCACTGTATATGGCCACCACA
Sequences:
>MK006396_K3840 ID=MK006396_K3840; Name=MK006396 K3840; organism=Daucus carota; type=genetic_marker
AAGATRACATTTACTGAGGAGTTCCATTTTTCTTAAAYAATGCATATGCG
TCACTGTATATGGCCACCACA
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
AAGATRACATTTACTGAGGAGTTCCATTTTTCTTAAA
Three Prime Flanking Region:
AATGCATATGCGTCACTGTATATGGCCACCACA
SNP:
C/T