MK004113 K1557

Resource Type: 
Genetic Marker
Name: 
MK004113 K1557
Identifier: 
MK004113_K1557
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK004113 K1557, is adjacent to primer, K1557_X.
The genetic_marker, MK004113 K1557, is adjacent to primer, K1557_Y.
The genetic_marker, MK004113 K1557, is adjacent to primer, K1557_Common.
The genetic_marker, MK004113 K1557, is located in gene, DCAR_010783.
The genetic_marker, MK004113 K1557, is located in gene, LOC108210975.
The marker_locus, K1557, is an instance of genetic_marker, MK004113 K1557.
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MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2014 70349Chromosome_335.358K1557MapViewer
2016 Integ NG full mapCH350.399K1557MapViewer
2016 80592 NG full mapChr343.39K1557MapViewer
Synonyms: 
  • MK004113
Sequence Coordinates: 
DCARv2_Chr3:28568318..28568364-
View location in JBrowse: 
Sequence: 
ATTCCTCCAAGGAGACCTTTTCTTCAATCACTACCCCKAAGCCTCACTTC
TATAACTCCTTCCCTAATCCA
Sequences: 
>MK004113_K1557 ID=MK004113_K1557; Name=MK004113 K1557; organism=Daucus carota; type=genetic_marker
ATTCCTCCAAGGAGACCTTTTCTTCAATCACTACCCCKAAGCCTCACTTC
TATAACTCCTTCCCTAATCCA
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
ATTCCTCCAAGGAGACCTTTTCTTCAATCACTACCCC
Three Prime Flanking Region: 
AAGCCTCACTTCTATAACTCCTTCCCTAATCCA
SNP: 
G/T