Resource Type:
Genetic Marker
Name:
MK003258 K0702
Identifier:
MK003258_K0702
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK003258 K0702, is adjacent to primer, K0702_X. |
| The genetic_marker, MK003258 K0702, is adjacent to primer, K0702_Y. |
| The genetic_marker, MK003258 K0702, is adjacent to primer, K0702_Common. |
| The genetic_marker, MK003258 K0702, is located in gene, LOC108215298. |
| The marker_locus, K0702, is an instance of genetic_marker, MK003258 K0702. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 Integ NG bin map | CH3 | 48.11 | K0702 | MapViewer |
| 2014 70349 | Chromosome_3 | 38.131 | K0702 | MapViewer |
| 2016 70349 NG bin map | Chr3 | 38.131 | K0702 | MapViewer |
| 2016 Integ NG full map | CH3 | 47.205 | K0702 | MapViewer |
| 2016 80592 NG full map | Chr3 | 42.574 | K0702 | MapViewer |
| 2016 70349 NG full map | Chr3 | 38.131 | K0702 | MapViewer |
Synonyms:
- MK003258
Sequence Coordinates:
DCARv2_Chr3:26126559..26126612+
View location in JBrowse:
Sequence:
ATGCTGCAGCTATACACGTCTCTCTCTTCAAATTACTYCATAATAATTGC
CTATTTGCACACCGCAGAACA
Sequences:
>MK003258_K0702 ID=MK003258_K0702; Name=MK003258 K0702; organism=Daucus carota; type=genetic_marker
ATGCTGCAGCTATACACGTCTCTCTCTTCAAATTACTYCATAATAATTGC
CTATTTGCACACCGCAGAACA
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
ATGCTGCAGCTATACACGTCTCTCTCTTCAAATTACT
Three Prime Flanking Region:
CATAATAATTGCCTATTTGCACACCGCAGAACA
SNP:
C/T