Resource Type:
Genetic Marker
Name:
MK005002 K2446
Identifier:
MK005002_K2446
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK005002 K2446, is adjacent to primer, K2446_X. |
| The genetic_marker, MK005002 K2446, is adjacent to primer, K2446_Y. |
| The genetic_marker, MK005002 K2446, is adjacent to primer, K2446_Common. |
| The genetic_marker, MK005002 K2446, is located in gene, DCAR_010175. |
| The genetic_marker, MK005002 K2446, is located in gene, LOC108211444. |
| The marker_locus, K2446, is an instance of genetic_marker, MK005002 K2446. |
MapViewer Marker Map Positions:
Synonyms:
- MK005002
Sequence Coordinates:
DCARv2_Chr3:16027513..16027599+
View location in JBrowse:
Sequence:
AATTTCAAAATCAAAATCAATCTTATTATAATTCAAAMATGTACGAAGCT
CAACAACATTTTGTAGATTTA
Sequences:
>MK005002_K2446 ID=MK005002_K2446; Name=MK005002 K2446; organism=Daucus carota; type=genetic_marker
AATTTCAAAATCAAAATCAATCTTATTATAATTCAAAMATGTACGAAGCT
CAACAACATTTTGTAGATTTA
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
AATTTCAAAATCAAAATCAATCTTATTATAATTCAAA
Three Prime Flanking Region:
ATGTACGAAGCTCAACAACATTTTGTAGATTTA
SNP:
A/C