MK005728 K3172

Resource Type: 
Genetic Marker
Name: 
MK005728 K3172
Identifier: 
MK005728_K3172
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK005728 K3172, is adjacent to primer, K3172_X.
The genetic_marker, MK005728 K3172, is adjacent to primer, K3172_Y.
The genetic_marker, MK005728 K3172, is adjacent to primer, K3172_Common.
The genetic_marker, MK005728 K3172, is located in gene, DCAR_009598.
The genetic_marker, MK005728 K3172, is located in gene, LOC108213295.
The marker_locus, K3172, is an instance of genetic_marker, MK005728 K3172.
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MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2014 70349Chromosome_363.02K3172MapViewer
2016 Integ NG full mapCH321.694K3172MapViewer
2016 Integ NG bin mapCH322.624K3172MapViewer
2016 70349 NG bin mapChr363.02K3172MapViewer
2016 70349 NG full mapChr363.02K3172MapViewer
Synonyms: 
  • MK005728
Sequence Coordinates: 
DCARv2_Chr3:9189631..9189683-
View location in JBrowse: 
Sequence: 
GACTAAGTACTCTCAAGGAGCTAAGCGAAGAACAGCTRGAGAAGATTGAA
AAGCTCAAGATAGAAATAAAG
Sequences: 
>MK005728_K3172 ID=MK005728_K3172; Name=MK005728 K3172; organism=Daucus carota; type=genetic_marker
GACTAAGTACTCTCAAGGAGCTAAGCGAAGAACAGCTRGAGAAGATTGAA
AAGCTCAAGATAGAAATAAAG
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
GACTAAGTACTCTCAAGGAGCTAAGCGAAGAACAGCT
Three Prime Flanking Region: 
GAGAAGATTGAAAAGCTCAAGATAGAAATAAAG
SNP: 
A/G