MK003113 K0557

Resource Type: 
Genetic Marker
Name: 
MK003113 K0557
Identifier: 
MK003113_K0557
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK003113 K0557, is adjacent to primer, K0557_X.
The genetic_marker, MK003113 K0557, is adjacent to primer, K0557_Y.
The genetic_marker, MK003113 K0557, is adjacent to primer, K0557_Common.
The genetic_marker, MK003113 K0557, is located in gene, DCAR_008814.
The genetic_marker, MK003113 K0557, is located in gene, LOC108213173.
The marker_locus, K0557, is an instance of genetic_marker, MK003113 K0557.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2014 70349Chromosome_382.142K0557MapViewer
2016 Integ NG full mapCH34.009K0557MapViewer
2016 70349 NG full mapChr382.142K0557MapViewer
2016 Integ NG bin mapCH34.168K0557MapViewer
2016 70349 NG bin mapChr382.142K0557MapViewer
Synonyms: 
  • MK003113
Sequence Coordinates: 
DCARv2_Chr3:1553296..1553349+
View location in JBrowse: 
DCARv2_Chr3:1553296..1553349+
Sequence: 
ACCGTTTGTTCGGCTCTCTGATCTCAGCCACCCATTTYCCCCATTTTCTC
ATCCTTATACCTCTGTAAGGG
Sequences: 
>MK003113_K0557 ID=MK003113_K0557; Name=MK003113 K0557; organism=Daucus carota; type=genetic_marker
ACCGTTTGTTCGGCTCTCTGATCTCAGCCACCCATTTYCCCCATTTTCTC
ATCCTTATACCTCTGTAAGGG
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
ACCGTTTGTTCGGCTCTCTGATCTCAGCCACCCATTT
Three Prime Flanking Region: 
CCCCATTTTCTCATCCTTATACCTCTGTAAGGG
SNP: 
C/T