MK002796 K0240

Resource Type: 
Genetic Marker
Name: 
MK002796 K0240
Identifier: 
MK002796_K0240
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK002796 K0240, is adjacent to primer, K0240_X.
The genetic_marker, MK002796 K0240, is adjacent to primer, K0240_Y.
The genetic_marker, MK002796 K0240, is adjacent to primer, K0240_Common.
The genetic_marker, MK002796 K0240, is located in gene, DCAR_008779.
The genetic_marker, MK002796 K0240, is located in gene, LOC108210440.
The marker_locus, K0240, is an instance of genetic_marker, MK002796 K0240.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70349 NG full mapChr384.058K0240MapViewer
2016 Integ NG bin mapCH32.033K0240MapViewer
2016 Integ NG full mapCH31.85K0240MapViewer
2016 70349 NG bin mapChr384.058K0240MapViewer
2014 70349Chromosome_384.058K0240MapViewer
Synonyms: 
  • MK002796
Sequence Coordinates: 
DCARv2_Chr3:1208188..1208237-
View location in JBrowse: 
DCARv2_Chr3:1208188..1208237-
Sequence: 
TAAACTTGAGAAATGGAAGATTAAACACCCTCCGAATYCTGAGTTAGACA
TGATGTACGAAGAGCCTACTG
Sequences: 
>MK002796_K0240 ID=MK002796_K0240; Name=MK002796 K0240; organism=Daucus carota; type=genetic_marker
TAAACTTGAGAAATGGAAGATTAAACACCCTCCGAATYCTGAGTTAGACA
TGATGTACGAAGAGCCTACTG
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
TAAACTTGAGAAATGGAAGATTAAACACCCTCCGAAT
Three Prime Flanking Region: 
CTGAGTTAGACATGATGTACGAAGAGCCTACTG
SNP: 
C/T