MK004960 K2404

Resource Type: 
Genetic Marker
Name: 
MK004960 K2404
Identifier: 
MK004960_K2404
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 5 relationships.
Relationships
The genetic_marker, MK004960 K2404, is adjacent to primer, K2404_X.
The genetic_marker, MK004960 K2404, is adjacent to primer, K2404_Y.
The genetic_marker, MK004960 K2404, is adjacent to primer, K2404_Common.
The genetic_marker, MK004960 K2404, is located in gene, LOC108215343.
The marker_locus, K2404, is an instance of genetic_marker, MK004960 K2404.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70349 NG full mapChr386.13K2404MapViewer
2016 Integ NG full mapCH30.672K2404MapViewer
2016 80592 NG full mapChr30K2404MapViewer
2014 70349Chromosome_386.13K2404MapViewer
Synonyms: 
  • MK004960
Sequence Coordinates: 
DCARv2_Chr3:310112..310162-
View location in JBrowse: 
DCARv2_Chr3:310112..310162-
Sequence: 
CAAGGGKAAAGTTCAAGTCAGTGAGCAACGTAAGAAAKTTCTTGGTTCTG
GTAAAGAAAACATGGTASAAA
Sequences: 
>MK004960_K2404 ID=MK004960_K2404; Name=MK004960 K2404; organism=Daucus carota; type=genetic_marker
CAAGGGKAAAGTTCAAGTCAGTGAGCAACGTAAGAAAKTTCTTGGTTCTG
GTAAAGAAAACATGGTASAAA
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
CAAGGGKAAAGTTCAAGTCAGTGAGCAACGTAAGAAA
Three Prime Flanking Region: 
TTCTTGGTTCTGGTAAAGAAAACATGGTASAAA
SNP: 
G/T