Resource Type:
Genetic Marker
Name:
MK006520 K3964
Identifier:
MK006520_K3964
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK006520 K3964, is adjacent to primer, K3964_X. |
| The genetic_marker, MK006520 K3964, is adjacent to primer, K3964_Y. |
| The genetic_marker, MK006520 K3964, is adjacent to primer, K3964_Common. |
| The genetic_marker, MK006520 K3964, is located in gene, DCAR_018777. |
| The genetic_marker, MK006520 K3964, is located in gene, LOC108220404. |
| The marker_locus, K3964, is an instance of genetic_marker, MK006520 K3964. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 Integ NG full map | CH5 | 52.35 | K3964 | MapViewer |
| 2016 70349 NG bin map | Chr5 | 13.623 | K3964 | MapViewer |
| 2016 70796 NG bin map | Chr5 | 15.293 | K3964 | MapViewer |
| 2016 80592 NG full map | Chr5 | 38.019 | K3964 | MapViewer |
| 2014 70349 | Chromosome_5 | 13.623 | K3964 | MapViewer |
| 2016 70796 NG full map | Chr5 | 15.293 | K3964 | MapViewer |
| 2016 70349 NG full map | Chr5 | 13.623 | K3964 | MapViewer |
| 2016 Integ NG bin map | CH5 | 52.999 | K3964 | MapViewer |
Synonyms:
- MK006520
Sequence Coordinates:
DCARv2_Chr5:33090668..33090720+
View location in JBrowse:
Sequence:
GGACARAACAAAGTGAAGTTGCCCTCTAAATTACCATWCATTCTTAGACT
TCTGCACAGAAAACTGTCCCC
Sequences:
>MK006520_K3964 ID=MK006520_K3964; Name=MK006520 K3964; organism=Daucus carota; type=genetic_marker
GGACARAACAAAGTGAAGTTGCCCTCTAAATTACCATWCATTCTTAGACT
TCTGCACAGAAAACTGTCCCC
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
GGACARAACAAAGTGAAGTTGCCCTCTAAATTACCAT
Three Prime Flanking Region:
CATTCTTAGACTTCTGCACAGAAAACTGTCCCC
SNP:
A/T