Resource Type:
Genetic Marker
Name:
MK003954 K1398
Identifier:
MK003954_K1398
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK003954 K1398, is adjacent to primer, K1398_X. |
| The genetic_marker, MK003954 K1398, is adjacent to primer, K1398_Y. |
| The genetic_marker, MK003954 K1398, is adjacent to primer, K1398_Common. |
| The genetic_marker, MK003954 K1398, is adjacent to gene, DCAR_018593. |
| The genetic_marker, MK003954 K1398, is located in gene, LOC108223253. |
| The marker_locus, K1398, is an instance of genetic_marker, MK003954 K1398. |
MapViewer Marker Map Positions:
Synonyms:
- MK003954
Sequence Coordinates:
DCARv2_Chr5:31358718..31358774-
View location in JBrowse:
Sequence:
TTGGTAATTAGTWAAGGTAAGGTAAGCTCAAATATATMTGTAGTCCAAAG
TGAGTAATTAGCGATAAAACA
Sequences:
>MK003954_K1398 ID=MK003954_K1398; Name=MK003954 K1398; organism=Daucus carota; type=genetic_marker
TTGGTAATTAGTWAAGGTAAGGTAAGCTCAAATATATMTGTAGTCCAAAG
TGAGTAATTAGCGATAAAACA
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
TTGGTAATTAGTWAAGGTAAGGTAAGCTCAAATATAT
Three Prime Flanking Region:
TGTAGTCCAAAGTGAGTAATTAGCGATAAAACA
SNP:
A/C