Resource Type:
Genetic Marker
Name:
MK003427 K0871
Identifier:
MK003427_K0871
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK003427 K0871, is adjacent to primer, K0871_X. |
| The genetic_marker, MK003427 K0871, is adjacent to primer, K0871_Y. |
| The genetic_marker, MK003427 K0871, is adjacent to primer, K0871_Common. |
| The genetic_marker, MK003427 K0871, is located in gene, DCAR_018008. |
| The genetic_marker, MK003427 K0871, is located in gene, LOC108219724. |
| The marker_locus, K0871, is an instance of genetic_marker, MK003427 K0871. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 Integ NG full map | CH5 | 46.66 | K0871 | MapViewer |
| 2016 70349 NG full map | Chr5 | 21.435 | K0871 | MapViewer |
| 2016 70349 NG bin map | Chr5 | 21.435 | K0871 | MapViewer |
| 2016 70796 NG full map | Chr5 | 20.494 | K0871 | MapViewer |
| 2014 70349 | Chromosome_5 | 21.435 | K0871 | MapViewer |
| 2016 Integ NG bin map | CH5 | 45.694 | K0871 | MapViewer |
Synonyms:
- MK003427
Sequence Coordinates:
DCARv2_Chr5:25598032..25598081+
View location in JBrowse:
Sequence:
TGCTTGGTGGAATTGGGATTGTGTTGATGGATTTAGCKCTTGATAAGAAT
AGAGCCAAGAGTGTGAAGGTT
Sequences:
>MK003427_K0871 ID=MK003427_K0871; Name=MK003427 K0871; organism=Daucus carota; type=genetic_marker
TGCTTGGTGGAATTGGGATTGTGTTGATGGATTTAGCKCTTGATAAGAAT
AGAGCCAAGAGTGTGAAGGTT
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
TGCTTGGTGGAATTGGGATTGTGTTGATGGATTTAGC
Three Prime Flanking Region:
CTTGATAAGAATAGAGCCAAGAGTGTGAAGGTT
SNP:
G/T