Resource Type:
Genetic Marker
Name:
MK004446 K1890
Identifier:
MK004446_K1890
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK004446 K1890, is adjacent to primer, K1890_X. |
| The genetic_marker, MK004446 K1890, is adjacent to primer, K1890_Y. |
| The genetic_marker, MK004446 K1890, is adjacent to primer, K1890_Common. |
| The genetic_marker, MK004446 K1890, is located in gene, DCAR_017808. |
| The genetic_marker, MK004446 K1890, is located in gene, LOC108222964. |
| The marker_locus, K1890, is an instance of genetic_marker, MK004446 K1890. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 70349 | Chromosome_5 | 23.433 | K1890 | MapViewer |
| 2016 70349 NG full map | Chr5 | 23.433 | K1890 | MapViewer |
| 2016 70349 NG bin map | Chr5 | 23.433 | K1890 | MapViewer |
| 2016 Integ NG bin map | CH5 | 44.179 | K1890 | MapViewer |
| 2016 70796 NG bin map | Chr5 | 23.474 | K1890 | MapViewer |
| 2016 70796 NG full map | Chr5 | 23.474 | K1890 | MapViewer |
| 2016 Integ NG full map | CH5 | 45.405 | K1890 | MapViewer |
| 2016 80592 NG full map | Chr5 | 34.151 | K1890 | MapViewer |
Synonyms:
- MK004446
Sequence Coordinates:
DCARv2_Chr5:23664455..23664516+
View location in JBrowse:
Sequence:
CAGACATTCCTCTTGGCAAGGAAGCCTATAAAAATTGRCGACAAAAAAAC
AATCTGCCATAGTCTTCGTTT
Sequences:
>MK004446_K1890 ID=MK004446_K1890; Name=MK004446 K1890; organism=Daucus carota; type=genetic_marker
CAGACATTCCTCTTGGCAAGGAAGCCTATAAAAATTGRCGACAAAAAAAC
AATCTGCCATAGTCTTCGTTT
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
CAGACATTCCTCTTGGCAAGGAAGCCTATAAAAATTG
Three Prime Flanking Region:
CGACAAAAAAACAATCTGCCATAGTCTTCGTTT
SNP:
A/G