Resource Type:
Genetic Marker
Name:
MK006537 K3981
Identifier:
MK006537_K3981
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK006537 K3981, is adjacent to primer, K3981_X. |
| The genetic_marker, MK006537 K3981, is adjacent to primer, K3981_Y. |
| The genetic_marker, MK006537 K3981, is adjacent to primer, K3981_Common. |
| The genetic_marker, MK006537 K3981, is located in gene, DCAR_022084. |
| The genetic_marker, MK006537 K3981, is located in gene, LOC108225736. |
| The marker_locus, K3981, is an instance of genetic_marker, MK006537 K3981. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 Integ NG bin map | CH6 | 49.811 | K3981 | MapViewer |
| 2016 70349 NG full map | Chr6 | 42.768 | K3981 | MapViewer |
| 2016 70796 NG full map | Chr6 | 48.502 | K3981 | MapViewer |
| 2016 70349 NG bin map | Chr6 | 42.768 | K3981 | MapViewer |
| 2014 70349 | Chromosome_6 | 42.768 | K3981 | MapViewer |
| 2016 Integ NG full map | CH6 | 53.623 | K3981 | MapViewer |
| 2016 80592 NG full map | Chr6 | 11.347 | K3981 | MapViewer |
| 2016 70796 NG bin map | Chr6 | 48.502 | K3981 | MapViewer |
Synonyms:
- MK006537
Sequence Coordinates:
DCARv2_Chr6:16816329..16816383-
View location in JBrowse:
Sequence:
GTTTGGAACGTGATTTGGTTGCTTATAATACGATAATYGGAGGATTTTGT
AAGATTGGAGAGGTTAAGAGG
Sequences:
>MK006537_K3981 ID=MK006537_K3981; Name=MK006537 K3981; organism=Daucus carota; type=genetic_marker
GTTTGGAACGTGATTTGGTTGCTTATAATACGATAATYGGAGGATTTTGT
AAGATTGGAGAGGTTAAGAGG
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
GTTTGGAACGTGATTTGGTTGCTTATAATACGATAAT
Three Prime Flanking Region:
GGAGGATTTTGTAAGATTGGAGAGGTTAAGAGG
SNP:
C/T