MK005420 K2864

Resource Type: 
Genetic Marker
Name: 
MK005420 K2864
Identifier: 
MK005420_K2864
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK005420 K2864, is adjacent to primer, K2864_X.
The genetic_marker, MK005420 K2864, is adjacent to primer, K2864_Y.
The genetic_marker, MK005420 K2864, is adjacent to primer, K2864_Common.
The genetic_marker, MK005420 K2864, is adjacent to gene, DCAR_020888.
The genetic_marker, MK005420 K2864, is adjacent to gene, LOC108227787.
The marker_locus, K2864, is an instance of genetic_marker, MK005420 K2864.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70796 NG full mapChr653.367K2864MapViewer
2016 70349 NG full mapChr650.796K2864MapViewer
2016 Integ NG full mapCH659.689K2864MapViewer
2014 70349Chromosome_650.796K2864MapViewer
2016 Integ NG bin mapCH655.45K2864MapViewer
Synonyms: 
  • MK005420
Sequence Coordinates: 
DCARv2_Chr6:27523139..27533533+
View location in JBrowse: 
DCARv2_Chr6:27523139..27533533+
Sequence: 
GATCAGTCCCCGCACCAACATAAACAGAACGATAAAAMTCAGACCCCTTG
GTCTCCAAATCACCACTCTCT
Sequences: 
>MK005420_K2864 ID=MK005420_K2864; Name=MK005420 K2864; organism=Daucus carota; type=genetic_marker
GATCAGTCCCCGCACCAACATAAACAGAACGATAAAAMTCAGACCCCTTG
GTCTCCAAATCACCACTCTCT
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
GATCAGTCCCCGCACCAACATAAACAGAACGATAAAA
Three Prime Flanking Region: 
TCAGACCCCTTGGTCTCCAAATCACCACTCTCT
SNP: 
A/C