MK006305 K3749

Resource Type: 
Genetic Marker
Name: 
MK006305 K3749
Identifier: 
MK006305_K3749
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK006305 K3749, is adjacent to primer, K3749_X.
The genetic_marker, MK006305 K3749, is adjacent to primer, K3749_Y.
The genetic_marker, MK006305 K3749, is adjacent to primer, K3749_Common.
The genetic_marker, MK006305 K3749, is adjacent to gene, DCAR_026176.
The genetic_marker, MK006305 K3749, is adjacent to gene, LOC108196278.
The marker_locus, K3749, is an instance of genetic_marker, MK006305 K3749.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70349 NG full mapChr73.353K3749MapViewer
2016 Integ NG bin mapCH755.384K3749MapViewer
2016 70349 NG bin mapChr73.353K3749MapViewer
2016 Integ NG full mapCH754.225K3749MapViewer
2014 70349Chromosome_73.353K3749MapViewer
Synonyms: 
  • MK006305
Sequence Coordinates: 
DCARv2_Chr7:33854817..33860048-
View location in JBrowse: 
DCARv2_Chr7:33854817..33860048-
Sequence: 
GATTCTCCATCAGTGCTTCCAATGCCAACAATGCTGAYCCTGACACAATT
GGAATATCATCCCCYGGAAAC
Sequences: 
>MK006305_K3749 ID=MK006305_K3749; Name=MK006305 K3749; organism=Daucus carota; type=genetic_marker
GATTCTCCATCAGTGCTTCCAATGCCAACAATGCTGAYCCTGACACAATT
GGAATATCATCCCCYGGAAAC
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
GATTCTCCATCAGTGCTTCCAATGCCAACAATGCTGA
Three Prime Flanking Region: 
CCTGACACAATTGGAATATCATCCCCYGGAAAC
SNP: 
C/T