MK006597 K4041

Resource Type: 
Genetic Marker
Name: 
MK006597 K4041
Identifier: 
MK006597_K4041
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK006597 K4041, is adjacent to primer, K4041_X.
The genetic_marker, MK006597 K4041, is adjacent to primer, K4041_Y.
The genetic_marker, MK006597 K4041, is adjacent to primer, K4041_Common.
The genetic_marker, MK006597 K4041, is located in gene, DCAR_026130.
The genetic_marker, MK006597 K4041, is located in gene, LOC108195894.
The marker_locus, K4041, is an instance of genetic_marker, MK006597 K4041.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 Integ NG bin mapCH752.665K4041MapViewer
2016 80592 NG full mapChr73.134K4041MapViewer
2016 70349 NG full mapChr73.577K4041MapViewer
2016 Integ NG full mapCH753.104K4041MapViewer
2014 70349Chromosome_73.577K4041MapViewer
Synonyms: 
  • MK006597
Sequence Coordinates: 
DCARv2_Chr7:33405341..33405391+
View location in JBrowse: 
DCARv2_Chr7:33405341..33405391+
Sequence: 
TGAGGAAGCTTAATTACTTGTTGGGCTGGAGCTGTTCKAGTGTTCCAAGA
AACCCAAGTTGGGGAATTGGG
Sequences: 
>MK006597_K4041 ID=MK006597_K4041; Name=MK006597 K4041; organism=Daucus carota; type=genetic_marker
TGAGGAAGCTTAATTACTTGTTGGGCTGGAGCTGTTCKAGTGTTCCAAGA
AACCCAAGTTGGGGAATTGGG
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
TGAGGAAGCTTAATTACTTGTTGGGCTGGAGCTGTTC
Three Prime Flanking Region: 
AGTGTTCCAAGAAACCCAAGTTGGGGAATTGGG
SNP: 
G/T