MK004672 K2116

Resource Type: 
Genetic Marker
Name: 
MK004672 K2116
Identifier: 
MK004672_K2116
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK004672 K2116, is adjacent to primer, K2116_X.
The genetic_marker, MK004672 K2116, is adjacent to primer, K2116_Y.
The genetic_marker, MK004672 K2116, is adjacent to primer, K2116_Common.
The genetic_marker, MK004672 K2116, is located in gene, DCAR_026012.
The genetic_marker, MK004672 K2116, is located in gene, LOC108196579.
The marker_locus, K2116, is an instance of genetic_marker, MK004672 K2116.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2014 70349Chromosome_75.787K2116MapViewer
2016 70349 NG full mapChr75.787K2116MapViewer
2016 Integ NG full mapCH751.707K2116MapViewer
Synonyms: 
  • MK004672
Sequence Coordinates: 
DCARv2_Chr7:32446441..32446493-
View location in JBrowse: 
DCARv2_Chr7:32446441..32446493-
Sequence: 
CATTTGGTGCTAAAGAATCATCTGTCTGCTCTTATCCYGCTGAAACAATA
ATTGCAGGTCCAGAAACTTCT
Sequences: 
>MK004672_K2116 ID=MK004672_K2116; Name=MK004672 K2116; organism=Daucus carota; type=genetic_marker
CATTTGGTGCTAAAGAATCATCTGTCTGCTCTTATCCYGCTGAAACAATA
ATTGCAGGTCCAGAAACTTCT
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
CATTTGGTGCTAAAGAATCATCTGTCTGCTCTTATCC
Three Prime Flanking Region: 
GCTGAAACAATAATTGCAGGTCCAGAAACTTCT
SNP: 
C/T