MK006521 K3965

Resource Type: 
Genetic Marker
Name: 
MK006521 K3965
Identifier: 
MK006521_K3965
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 5 relationships.
Relationships
The genetic_marker, MK006521 K3965, is adjacent to primer, K3965_X.
The genetic_marker, MK006521 K3965, is adjacent to primer, K3965_Y.
The genetic_marker, MK006521 K3965, is adjacent to primer, K3965_Common.
The genetic_marker, MK006521 K3965, is located in gene, LOC108193732.
The marker_locus, K3965, is an instance of genetic_marker, MK006521 K3965.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 Integ NG full mapCH751.062K3965MapViewer
2016 70349 NG full mapChr76.626K3965MapViewer
2014 70349Chromosome_76.626K3965MapViewer
Synonyms: 
  • MK006521
Sequence Coordinates: 
DCARv2_Chr7:31880575..31880657-
View location in JBrowse: 
DCARv2_Chr7:31880575..31880657-
Sequence: 
GGTTAGAAATGTAATGGATTTATATTTTTGGTAATAARTCATGTATGTTT
CCAGACAATCACARTCTTCAC
Sequences: 
>MK006521_K3965 ID=MK006521_K3965; Name=MK006521 K3965; organism=Daucus carota; type=genetic_marker
GGTTAGAAATGTAATGGATTTATATTTTTGGTAATAARTCATGTATGTTT
CCAGACAATCACARTCTTCAC
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
GGTTAGAAATGTAATGGATTTATATTTTTGGTAATAA
Three Prime Flanking Region: 
TCATGTATGTTTCCAGACAATCACARTCTTCAC
SNP: 
A/G