MK003172 K0616

Resource Type: 
Genetic Marker
Name: 
MK003172 K0616
Identifier: 
MK003172_K0616
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 5 relationships.
Relationships
The genetic_marker, MK003172 K0616, is adjacent to primer, K0616_X.
The genetic_marker, MK003172 K0616, is adjacent to primer, K0616_Y.
The genetic_marker, MK003172 K0616, is adjacent to primer, K0616_Common.
The genetic_marker, MK003172 K0616, is located in gene, LOC108193292.
The marker_locus, K0616, is an instance of genetic_marker, MK003172 K0616.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70349 NG bin mapChr76.946K0616MapViewer
2016 Integ NG bin mapCH752.093K0616MapViewer
2014 70349Chromosome_76.946K0616MapViewer
2016 70349 NG full mapChr76.946K0616MapViewer
2016 Integ NG full mapCH750.917K0616MapViewer
Synonyms: 
  • MK003172
Sequence Coordinates: 
DCARv2_Chr7:31388300..31388355-
View location in JBrowse: 
DCARv2_Chr7:31388300..31388355-
Sequence: 
GCTATATGAAGGGGTAATCATAGCTCTGCATAACATCWTCTACAAAAACT
ACAGCAAGTGCCAACAACATC
Sequences: 
>MK003172_K0616 ID=MK003172_K0616; Name=MK003172 K0616; organism=Daucus carota; type=genetic_marker
GCTATATGAAGGGGTAATCATAGCTCTGCATAACATCWTCTACAAAAACT
ACAGCAAGTGCCAACAACATC
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
GCTATATGAAGGGGTAATCATAGCTCTGCATAACATC
Three Prime Flanking Region: 
TCTACAAAAACTACAGCAAGTGCCAACAACATC
SNP: 
A/T