MK006226 K3670

Resource Type: 
Genetic Marker
Name: 
MK006226 K3670
Identifier: 
MK006226_K3670
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK006226 K3670, is adjacent to primer, K3670_X.
The genetic_marker, MK006226 K3670, is adjacent to primer, K3670_Y.
The genetic_marker, MK006226 K3670, is adjacent to primer, K3670_Common.
The genetic_marker, MK006226 K3670, is located in gene, DCAR_025666.
The genetic_marker, MK006226 K3670, is located in gene, LOC108195357.
The marker_locus, K3670, is an instance of genetic_marker, MK006226 K3670.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2014 70349Chromosome_710.138K3670MapViewer
2016 70349 NG full mapChr710.138K3670MapViewer
2016 Integ NG full mapCH747.666K3670MapViewer
Synonyms: 
  • MK006226
Sequence Coordinates: 
DCARv2_Chr7:29530575..29530628-
View location in JBrowse: 
DCARv2_Chr7:29530575..29530628-
Sequence: 
CCATGKCCTTTTTGTCTTGGTGCCTTTCATTAGCTTCYTCCCTCTGTAAT
CTCTGGCTCCTACCCTCTCTA
Sequences: 
>MK006226_K3670 ID=MK006226_K3670; Name=MK006226 K3670; organism=Daucus carota; type=genetic_marker
CCATGKCCTTTTTGTCTTGGTGCCTTTCATTAGCTTCYTCCCTCTGTAAT
CTCTGGCTCCTACCCTCTCTA
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
CCATGKCCTTTTTGTCTTGGTGCCTTTCATTAGCTTC
Three Prime Flanking Region: 
TCCCTCTGTAATCTCTGGCTCCTACCCTCTCTA
SNP: 
C/T