MK006512 K3956

Resource Type: 
Genetic Marker
Name: 
MK006512 K3956
Identifier: 
MK006512_K3956
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK006512 K3956, is adjacent to primer, K3956_X.
The genetic_marker, MK006512 K3956, is adjacent to primer, K3956_Y.
The genetic_marker, MK006512 K3956, is adjacent to primer, K3956_Common.
The genetic_marker, MK006512 K3956, is located in gene, DCAR_025432.
The genetic_marker, MK006512 K3956, is located in gene, LOC108195315.
The marker_locus, K3956, is an instance of genetic_marker, MK006512 K3956.
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MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70349 NG bin mapChr711.818K3956MapViewer
2016 Integ NG full mapCH745.78K3956MapViewer
2016 80592 NG full mapChr78.701K3956MapViewer
2014 70349Chromosome_711.818K3956MapViewer
2016 70349 NG full mapChr711.818K3956MapViewer
2016 Integ NG bin mapCH747.055K3956MapViewer
Synonyms: 
  • MK006512
Sequence Coordinates: 
DCARv2_Chr7:27176349..27176407+
View location in JBrowse: 
Sequence: 
CAAGATTYGAAGATATTGATGATGCTGTGTCTTTCCTYGTCTCTTCTGTT
TGTGAACTAGAAATAGCTGGC
Sequences: 
>MK006512_K3956 ID=MK006512_K3956; Name=MK006512 K3956; organism=Daucus carota; type=genetic_marker
CAAGATTYGAAGATATTGATGATGCTGTGTCTTTCCTYGTCTCTTCTGTT
TGTGAACTAGAAATAGCTGGC
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
CAAGATTYGAAGATATTGATGATGCTGTGTCTTTCCT
Three Prime Flanking Region: 
GTCTCTTCTGTTTGTGAACTAGAAATAGCTGGC
SNP: 
C/T