MK005106 K2550

Resource Type: 
Genetic Marker
Name: 
MK005106 K2550
Identifier: 
MK005106_K2550
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK005106 K2550, is adjacent to primer, K2550_X.
The genetic_marker, MK005106 K2550, is adjacent to primer, K2550_Y.
The genetic_marker, MK005106 K2550, is adjacent to primer, K2550_Common.
The genetic_marker, MK005106 K2550, is located in gene, DCAR_031521.
The genetic_marker, MK005106 K2550, is located in gene, LOC108196698.
The marker_locus, K2550, is an instance of genetic_marker, MK005106 K2550.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2014 70349Chromosome_715.648K2550MapViewer
2016 70349 NG full mapChr715.648K2550MapViewer
2016 Integ NG bin mapCH743.891K2550MapViewer
2016 Integ NG full mapCH742.847K2550MapViewer
2016 70349 NG bin mapChr715.648K2550MapViewer
Synonyms: 
  • MK005106
Sequence Coordinates: 
DCARv2_Chr7:23313200..23313249-
View location in JBrowse: 
DCARv2_Chr7:23313200..23313249-
Sequence: 
AATCTYCATATATGCATAGACTTAGGTGGCATTCTCCKATTGTAAAGCTG
ACATTTTGGTCTTTTGTGTTC
Sequences: 
>MK005106_K2550 ID=MK005106_K2550; Name=MK005106 K2550; organism=Daucus carota; type=genetic_marker
AATCTYCATATATGCATAGACTTAGGTGGCATTCTCCKATTGTAAAGCTG
ACATTTTGGTCTTTTGTGTTC
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
AATCTYCATATATGCATAGACTTAGGTGGCATTCTCC
Three Prime Flanking Region: 
ATTGTAAAGCTGACATTTTGGTCTTTTGTGTTC
SNP: 
G/T