Resource Type:
Genetic Marker
Name:
MK005338 K2782
Identifier:
MK005338_K2782
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK005338 K2782, is adjacent to primer, K2782_X. |
| The genetic_marker, MK005338 K2782, is adjacent to primer, K2782_Y. |
| The genetic_marker, MK005338 K2782, is adjacent to primer, K2782_Common. |
| The genetic_marker, MK005338 K2782, is located in gene, DCAR_024890. |
| The genetic_marker, MK005338 K2782, is located in gene, LOC108193816. |
| The marker_locus, K2782, is an instance of genetic_marker, MK005338 K2782. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 80592 NG full map | Chr7 | 12.456 | K2782 | MapViewer |
| 2016 Integ NG full map | CH7 | 39.417 | K2782 | MapViewer |
| 2016 70349 NG bin map | Chr7 | 20.733 | K2782 | MapViewer |
| 2016 70349 NG full map | Chr7 | 20.733 | K2782 | MapViewer |
| 2016 Integ NG bin map | CH7 | 39.267 | K2782 | MapViewer |
| 2014 70349 | Chromosome_7 | 20.733 | K2782 | MapViewer |
Synonyms:
- MK005338
Sequence Coordinates:
DCARv2_Chr7:20479612..20479662+
View location in JBrowse:
Sequence:
SKGACCAAATTGAGGTATTCCAGCAGCAGCTTCAACTWGCTAAAGATTTG
AAAAGACCGGTGTCTGTTCAT
Sequences:
>MK005338_K2782 ID=MK005338_K2782; Name=MK005338 K2782; organism=Daucus carota; type=genetic_marker
SKGACCAAATTGAGGTATTCCAGCAGCAGCTTCAACTWGCTAAAGATTTG
AAAAGACCGGTGTCTGTTCAT
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
SKGACCAAATTGAGGTATTCCAGCAGCAGCTTCAACT
Three Prime Flanking Region:
GCTAAAGATTTGAAAAGACCGGTGTCTGTTCAT
SNP:
A/T