MK006559 K4003

Resource Type: 
Genetic Marker
Name: 
MK006559 K4003
Identifier: 
MK006559_K4003
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK006559 K4003, is adjacent to primer, K4003_X.
The genetic_marker, MK006559 K4003, is adjacent to primer, K4003_Y.
The genetic_marker, MK006559 K4003, is adjacent to primer, K4003_Common.
The genetic_marker, MK006559 K4003, is located in gene, DCAR_024722.
The genetic_marker, MK006559 K4003, is located in gene, LOC108196168.
The marker_locus, K4003, is an instance of genetic_marker, MK006559 K4003.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 Integ NG full mapCH736.627K4003MapViewer
2016 70349 NG bin mapChr722.436K4003MapViewer
2016 Integ NG bin mapCH737.771K4003MapViewer
2016 70349 NG full mapChr722.436K4003MapViewer
2014 70349Chromosome_722.436K4003MapViewer
Synonyms: 
  • MK006559
Sequence Coordinates: 
DCARv2_Chr7:18561176..18561227+
View location in JBrowse: 
DCARv2_Chr7:18561176..18561227+
Sequence: 
CTCTTAATTTGGAAGAATTGGAAGAGGAGGATAGCTCWGGGAAGTGGACT
ACCAGTTTTAAATTGTCGGGT
Sequences: 
>MK006559_K4003 ID=MK006559_K4003; Name=MK006559 K4003; organism=Daucus carota; type=genetic_marker
CTCTTAATTTGGAAGAATTGGAAGAGGAGGATAGCTCWGGGAAGTGGACT
ACCAGTTTTAAATTGTCGGGT
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
CTCTTAATTTGGAAGAATTGGAAGAGGAGGATAGCTC
Three Prime Flanking Region: 
GGGAAGTGGACTACCAGTTTTAAATTGTCGGGT
SNP: 
A/T