MK003442 K0886

Resource Type: 
Genetic Marker
Name: 
MK003442 K0886
Identifier: 
MK003442_K0886
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 5 relationships.
Relationships
The genetic_marker, MK003442 K0886, is adjacent to primer, K0886_X.
The genetic_marker, MK003442 K0886, is adjacent to primer, K0886_Y.
The genetic_marker, MK003442 K0886, is adjacent to primer, K0886_Common.
The genetic_marker, MK003442 K0886, is located in gene, LOC108195983.
The marker_locus, K0886, is an instance of genetic_marker, MK003442 K0886.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2014 70349Chromosome_726.612K0886MapViewer
2016 Integ NG full mapCH732.676K0886MapViewer
2016 70349 NG full mapChr726.612K0886MapViewer
2016 Integ NG bin mapCH733.712K0886MapViewer
2016 70349 NG bin mapChr726.612K0886MapViewer
Synonyms: 
  • MK003442
Sequence Coordinates: 
DCARv2_Chr7:17346336..17346381+
View location in JBrowse: 
DCARv2_Chr7:17346336..17346381+
Sequence: 
AATGCATCCGGCAGCAGCTACATATTTTGTGCCATCAKCCTTCCTCAGCT
TCAGATGCCAACAGTCTGTAA
Sequences: 
>MK003442_K0886 ID=MK003442_K0886; Name=MK003442 K0886; organism=Daucus carota; type=genetic_marker
AATGCATCCGGCAGCAGCTACATATTTTGTGCCATCAKCCTTCCTCAGCT
TCAGATGCCAACAGTCTGTAA
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
AATGCATCCGGCAGCAGCTACATATTTTGTGCCATCA
Three Prime Flanking Region: 
CCTTCCTCAGCTTCAGATGCCAACAGTCTGTAA
SNP: 
G/T