MK004176 K1620

Resource Type: 
Genetic Marker
Name: 
MK004176 K1620
Identifier: 
MK004176_K1620
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK004176 K1620, is adjacent to primer, K1620_X.
The genetic_marker, MK004176 K1620, is adjacent to primer, K1620_Y.
The genetic_marker, MK004176 K1620, is adjacent to primer, K1620_Common.
The genetic_marker, MK004176 K1620, is located in gene, DCAR_023528.
The genetic_marker, MK004176 K1620, is located in gene, LOC108193918.
The marker_locus, K1620, is an instance of genetic_marker, MK004176 K1620.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70349 NG full mapChr758.898K1620MapViewer
2016 Integ NG bin mapCH76.504K1620MapViewer
2016 Integ NG full mapCH75.989K1620MapViewer
2016 70349 NG bin mapChr758.898K1620MapViewer
2014 70349Chromosome_758.898K1620MapViewer
Synonyms: 
  • MK004176
Sequence Coordinates: 
DCARv2_Chr7:2424376..2424431-
View location in JBrowse: 
DCARv2_Chr7:2424376..2424431-
Sequence: 
GTACAATGCATGCTAATTGTTGTATTGGATTAGATAGYAAAATTCACGAT
CTCCGAATTATGCTCGAGGAC
Sequences: 
>MK004176_K1620 ID=MK004176_K1620; Name=MK004176 K1620; organism=Daucus carota; type=genetic_marker
GTACAATGCATGCTAATTGTTGTATTGGATTAGATAGYAAAATTCACGAT
CTCCGAATTATGCTCGAGGAC
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
GTACAATGCATGCTAATTGTTGTATTGGATTAGATAG
Three Prime Flanking Region: 
AAAATTCACGATCTCCGAATTATGCTCGAGGAC
SNP: 
C/T