MK004164 K1608

Resource Type: 
Genetic Marker
Name: 
MK004164 K1608
Identifier: 
MK004164_K1608
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 5 relationships.
Relationships
The genetic_marker, MK004164 K1608, is adjacent to primer, K1608_X.
The genetic_marker, MK004164 K1608, is adjacent to primer, K1608_Y.
The genetic_marker, MK004164 K1608, is adjacent to primer, K1608_Common.
The genetic_marker, MK004164 K1608, is located in gene, LOC108196144.
The marker_locus, K1608, is an instance of genetic_marker, MK004164 K1608.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70349 NG bin mapChr760.661K1608MapViewer
2016 Integ NG bin mapCH74.388K1608MapViewer
2016 70349 NG full mapChr760.661K1608MapViewer
2016 Integ NG full mapCH74.401K1608MapViewer
2014 70349Chromosome_760.661K1608MapViewer
Synonyms: 
  • MK004164
Sequence Coordinates: 
DCARv2_Chr7:1966578..1966631-
View location in JBrowse: 
DCARv2_Chr7:1966578..1966631-
Sequence: 
MATTTCCCATGTGAATTACTGTTTAGTTGTGTAGTGTKTTGATGTTTGAT
TTGTGTGAGGGAAGAGGCTAT
Sequences: 
>MK004164_K1608 ID=MK004164_K1608; Name=MK004164 K1608; organism=Daucus carota; type=genetic_marker
MATTTCCCATGTGAATTACTGTTTAGTTGTGTAGTGTKTTGATGTTTGAT
TTGTGTGAGGGAAGAGGCTAT
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
MATTTCCCATGTGAATTACTGTTTAGTTGTGTAGTGT
Three Prime Flanking Region: 
TTGATGTTTGATTTGTGTGAGGGAAGAGGCTAT
SNP: 
G/T