MK004602 K2046

Resource Type: 
Genetic Marker
Name: 
MK004602 K2046
Identifier: 
MK004602_K2046
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK004602 K2046, is adjacent to primer, K2046_X.
The genetic_marker, MK004602 K2046, is adjacent to primer, K2046_Y.
The genetic_marker, MK004602 K2046, is adjacent to primer, K2046_Common.
The genetic_marker, MK004602 K2046, is located in gene, DCAR_026805.
The genetic_marker, MK004602 K2046, is located in gene, LOC108199317.
The marker_locus, K2046, is an instance of genetic_marker, MK004602 K2046.
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MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 80592 NG full mapChr89.22K2046MapViewer
2016 70349 NG full mapChr85.645K2046MapViewer
2014 70349Chromosome_85.645K2046MapViewer
2016 70796 NG full mapChr88.866K2046MapViewer
2016 Integ NG full mapCH857.668K2046MapViewer
2016 Integ NG bin mapCH851.976K2046MapViewer
2016 70796 NG bin mapChr88.866K2046MapViewer
Synonyms: 
  • MK004602
Sequence Coordinates: 
DCARv2_Chr8:28549849..28549897+
View location in JBrowse: 
Sequence: 
CTGCAACATGATCAAGTCGAGGTGGAGGAACCACAGCRCTCTGACTGCCT
ACACCAGTAAATGCACCACAC
Sequences: 
>MK004602_K2046 ID=MK004602_K2046; Name=MK004602 K2046; organism=Daucus carota; type=genetic_marker
CTGCAACATGATCAAGTCGAGGTGGAGGAACCACAGCRCTCTGACTGCCT
ACACCAGTAAATGCACCACAC
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
CTGCAACATGATCAAGTCGAGGTGGAGGAACCACAGC
Three Prime Flanking Region: 
CTCTGACTGCCTACACCAGTAAATGCACCACAC
SNP: 
A/G