Resource Type:
Genetic Marker
Name:
MK006471 K3915
Identifier:
MK006471_K3915
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK006471 K3915, is adjacent to primer, K3915_X. |
| The genetic_marker, MK006471 K3915, is adjacent to primer, K3915_Y. |
| The genetic_marker, MK006471 K3915, is adjacent to primer, K3915_Common. |
| The genetic_marker, MK006471 K3915, is located in gene, DCAR_027068. |
| The genetic_marker, MK006471 K3915, is located in gene, LOC108200062. |
| The marker_locus, K3915, is an instance of genetic_marker, MK006471 K3915. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 70349 | Chromosome_8 | 11.24 | K3915 | MapViewer |
| 2016 Integ NG bin map | CH8 | 48.45 | K3915 | MapViewer |
| 2016 70349 NG bin map | Chr8 | 11.24 | K3915 | MapViewer |
| 2016 Integ NG full map | CH8 | 53.783 | K3915 | MapViewer |
| 2016 70349 NG full map | Chr8 | 11.24 | K3915 | MapViewer |
| 2016 70796 NG full map | Chr8 | 12.163 | K3915 | MapViewer |
Synonyms:
- MK006471
Sequence Coordinates:
DCARv2_Chr8:26400158..26400221-
View location in JBrowse:
Sequence:
TAGAGGGTATGATTCTCTTGTCTGAACTCTCTCGTCGYCGTATTCGAAGC
ATCAATAGTTTGATTAAAGTG
Sequences:
>MK006471_K3915 ID=MK006471_K3915; Name=MK006471 K3915; organism=Daucus carota; type=genetic_marker
TAGAGGGTATGATTCTCTTGTCTGAACTCTCTCGTCGYCGTATTCGAAGC
ATCAATAGTTTGATTAAAGTG
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
TAGAGGGTATGATTCTCTTGTCTGAACTCTCTCGTCG
Three Prime Flanking Region:
CGTATTCGAAGCATCAATAGTTTGATTAAAGTG
SNP:
C/T