Resource Type:
Genetic Marker
Name:
MK005109 K2553
Identifier:
MK005109_K2553
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK005109 K2553, is adjacent to primer, K2553_X. |
| The genetic_marker, MK005109 K2553, is adjacent to primer, K2553_Y. |
| The genetic_marker, MK005109 K2553, is adjacent to primer, K2553_Common. |
| The genetic_marker, MK005109 K2553, is located in gene, DCAR_027130. |
| The genetic_marker, MK005109 K2553, is located in gene, LOC108199517. |
| The marker_locus, K2553, is an instance of genetic_marker, MK005109 K2553. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 70796 NG full map | Chr8 | 13.317 | K2553 | MapViewer |
| 2016 70349 NG full map | Chr8 | 11.57 | K2553 | MapViewer |
| 2016 70796 NG bin map | Chr8 | 13.317 | K2553 | MapViewer |
| 2016 Integ NG full map | CH8 | 52.903 | K2553 | MapViewer |
| 2016 Integ NG bin map | CH8 | 47.725 | K2553 | MapViewer |
| 2016 70349 NG bin map | Chr8 | 11.57 | K2553 | MapViewer |
| 2014 70349 | Chromosome_8 | 11.57 | K2553 | MapViewer |
Synonyms:
- MK005109
Sequence Coordinates:
DCARv2_Chr8:25877872..25877921+
View location in JBrowse:
Sequence:
AAGGGAGTAGGAATAAGAGGAAGTTTAGAGCTGATCCRCCGGTTTCGGAT
GCGAGTAAAACGGTTTCGGTG
Sequences:
>MK005109_K2553 ID=MK005109_K2553; Name=MK005109 K2553; organism=Daucus carota; type=genetic_marker
AAGGGAGTAGGAATAAGAGGAAGTTTAGAGCTGATCCRCCGGTTTCGGAT
GCGAGTAAAACGGTTTCGGTG
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
AAGGGAGTAGGAATAAGAGGAAGTTTAGAGCTGATCC
Three Prime Flanking Region:
CCGGTTTCGGATGCGAGTAAAACGGTTTCGGTG
SNP:
A/G