MK005109 K2553

Resource Type: 
Genetic Marker
Name: 
MK005109 K2553
Identifier: 
MK005109_K2553
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK005109 K2553, is adjacent to primer, K2553_X.
The genetic_marker, MK005109 K2553, is adjacent to primer, K2553_Y.
The genetic_marker, MK005109 K2553, is adjacent to primer, K2553_Common.
The genetic_marker, MK005109 K2553, is located in gene, DCAR_027130.
The genetic_marker, MK005109 K2553, is located in gene, LOC108199517.
The marker_locus, K2553, is an instance of genetic_marker, MK005109 K2553.
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MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70796 NG full mapChr813.317K2553MapViewer
2016 70349 NG full mapChr811.57K2553MapViewer
2016 70796 NG bin mapChr813.317K2553MapViewer
2016 Integ NG full mapCH852.903K2553MapViewer
2016 Integ NG bin mapCH847.725K2553MapViewer
2016 70349 NG bin mapChr811.57K2553MapViewer
2014 70349Chromosome_811.57K2553MapViewer
Synonyms: 
  • MK005109
Sequence Coordinates: 
DCARv2_Chr8:25877872..25877921+
View location in JBrowse: 
Sequence: 
AAGGGAGTAGGAATAAGAGGAAGTTTAGAGCTGATCCRCCGGTTTCGGAT
GCGAGTAAAACGGTTTCGGTG
Sequences: 
>MK005109_K2553 ID=MK005109_K2553; Name=MK005109 K2553; organism=Daucus carota; type=genetic_marker
AAGGGAGTAGGAATAAGAGGAAGTTTAGAGCTGATCCRCCGGTTTCGGAT
GCGAGTAAAACGGTTTCGGTG
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
AAGGGAGTAGGAATAAGAGGAAGTTTAGAGCTGATCC
Three Prime Flanking Region: 
CCGGTTTCGGATGCGAGTAAAACGGTTTCGGTG
SNP: 
A/G