Resource Type:
Genetic Marker
Name:
MK004041 K1485
Identifier:
MK004041_K1485
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK004041 K1485, is adjacent to primer, K1485_X. |
| The genetic_marker, MK004041 K1485, is adjacent to primer, K1485_Y. |
| The genetic_marker, MK004041 K1485, is adjacent to primer, K1485_Common. |
| The genetic_marker, MK004041 K1485, is adjacent to gene, DCAR_027470. |
| The genetic_marker, MK004041 K1485, is adjacent to gene, LOC108199335. |
| The marker_locus, K1485, is an instance of genetic_marker, MK004041 K1485. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 70349 NG bin map | Chr8 | 13.631 | K1485 | MapViewer |
| 2014 70349 | Chromosome_8 | 13.631 | K1485 | MapViewer |
| 2016 70796 NG full map | Chr8 | 16.841 | K1485 | MapViewer |
| 2016 Integ NG bin map | CH8 | 45.924 | K1485 | MapViewer |
| 2016 Integ NG full map | CH8 | 49.894 | K1485 | MapViewer |
| 2016 70349 NG full map | Chr8 | 13.631 | K1485 | MapViewer |
Synonyms:
- MK004041
Sequence Coordinates:
DCARv2_Chr8:22795721..22827855+
View location in JBrowse:
Sequence:
CCCACGAGTTTTTTCTCCAGGTATGCAACAATTTCCCWTTTTCTTGGAAG
CCCATTTACAAATTCTTCCAT
Sequences:
>MK004041_K1485 ID=MK004041_K1485; Name=MK004041 K1485; organism=Daucus carota; type=genetic_marker
CCCACGAGTTTTTTCTCCAGGTATGCAACAATTTCCCWTTTTCTTGGAAG
CCCATTTACAAATTCTTCCAT
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
CCCACGAGTTTTTTCTCCAGGTATGCAACAATTTCCC
Three Prime Flanking Region:
TTTTCTTGGAAGCCCATTTACAAATTCTTCCAT
SNP:
A/T