Resource Type:
Genetic Marker
Name:
MK004653 K2097
Identifier:
MK004653_K2097
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK004653 K2097, is adjacent to primer, K2097_X. |
| The genetic_marker, MK004653 K2097, is adjacent to primer, K2097_Y. |
| The genetic_marker, MK004653 K2097, is adjacent to primer, K2097_Common. |
| The genetic_marker, MK004653 K2097, is adjacent to gene, DCAR_027471. |
| The genetic_marker, MK004653 K2097, is adjacent to gene, LOC108199331. |
| The marker_locus, K2097, is an instance of genetic_marker, MK004653 K2097. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 80592 NG full map | Chr8 | 15.152 | K2097 | MapViewer |
| 2016 Integ NG full map | CH8 | 50.098 | K2097 | MapViewer |
| 2016 Integ NG bin map | CH8 | 43.822 | K2097 | MapViewer |
| 2014 70349 | Chromosome_8 | 13.631 | K2097 | MapViewer |
| 2016 70796 NG full map | Chr8 | 16.841 | K2097 | MapViewer |
| 2016 70349 NG full map | Chr8 | 13.631 | K2097 | MapViewer |
Synonyms:
- MK004653
Sequence Coordinates:
DCARv2_Chr8:22787625..22799579+
View location in JBrowse:
Sequence:
AATGGCATGATATGAAGAAGGTGTTTGAGCATTGGAGYAGTTGTTATGAT
AAGAATGGGAAGCTCAATAAG
Sequences:
>MK004653_K2097 ID=MK004653_K2097; Name=MK004653 K2097; organism=Daucus carota; type=genetic_marker
AATGGCATGATATGAAGAAGGTGTTTGAGCATTGGAGYAGTTGTTATGAT
AAGAATGGGAAGCTCAATAAG
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
AATGGCATGATATGAAGAAGGTGTTTGAGCATTGGAG
Three Prime Flanking Region:
AGTTGTTATGATAAGAATGGGAAGCTCAATAAG
SNP:
C/T