MK004208 K1652

Resource Type: 
Genetic Marker
Name: 
MK004208 K1652
Identifier: 
MK004208_K1652
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK004208 K1652, is adjacent to primer, K1652_X.
The genetic_marker, MK004208 K1652, is adjacent to primer, K1652_Y.
The genetic_marker, MK004208 K1652, is adjacent to primer, K1652_Common.
The genetic_marker, MK004208 K1652, is located in gene, DCAR_029262.
The genetic_marker, MK004208 K1652, is located in gene, LOC108202941.
The marker_locus, K1652, is an instance of genetic_marker, MK004208 K1652.
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MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70796 NG full mapChr98.548K1652MapViewer
2016 Integ NG bin mapCH97.645K1652MapViewer
2016 70349 NG full mapChr95.934K1652MapViewer
2014 70349Chromosome_95.934K1652MapViewer
2016 Integ NG full mapCH96.778K1652MapViewer
2016 70349 NG bin mapChr95.934K1652MapViewer
2016 70796 NG bin mapChr98.548K1652MapViewer
Synonyms: 
  • MK004208
Sequence Coordinates: 
DCARv2_Chr9:4002946..4002992-
View location in JBrowse: 
Sequence: 
AGGGARTGCAGGGAACTTTGGGCCAACACAGCATCCTYCACCACAGCAGA
ATTATGGTCCTCCTGGAGTTG
Sequences: 
>MK004208_K1652 ID=MK004208_K1652; Name=MK004208 K1652; organism=Daucus carota; type=genetic_marker
AGGGARTGCAGGGAACTTTGGGCCAACACAGCATCCTYCACCACAGCAGA
ATTATGGTCCTCCTGGAGTTG
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
AGGGARTGCAGGGAACTTTGGGCCAACACAGCATCCT
Three Prime Flanking Region: 
CACCACAGCAGAATTATGGTCCTCCTGGAGTTG
SNP: 
C/T