Resource Type:
Genetic Marker
Name:
MK004208 K1652
Identifier:
MK004208_K1652
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK004208 K1652, is adjacent to primer, K1652_X. |
| The genetic_marker, MK004208 K1652, is adjacent to primer, K1652_Y. |
| The genetic_marker, MK004208 K1652, is adjacent to primer, K1652_Common. |
| The genetic_marker, MK004208 K1652, is located in gene, DCAR_029262. |
| The genetic_marker, MK004208 K1652, is located in gene, LOC108202941. |
| The marker_locus, K1652, is an instance of genetic_marker, MK004208 K1652. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 70796 NG full map | Chr9 | 8.548 | K1652 | MapViewer |
| 2016 Integ NG bin map | CH9 | 7.645 | K1652 | MapViewer |
| 2016 70349 NG full map | Chr9 | 5.934 | K1652 | MapViewer |
| 2014 70349 | Chromosome_9 | 5.934 | K1652 | MapViewer |
| 2016 Integ NG full map | CH9 | 6.778 | K1652 | MapViewer |
| 2016 70349 NG bin map | Chr9 | 5.934 | K1652 | MapViewer |
| 2016 70796 NG bin map | Chr9 | 8.548 | K1652 | MapViewer |
Synonyms:
- MK004208
Sequence Coordinates:
DCARv2_Chr9:4002946..4002992-
View location in JBrowse:
Sequence:
AGGGARTGCAGGGAACTTTGGGCCAACACAGCATCCTYCACCACAGCAGA
ATTATGGTCCTCCTGGAGTTG
Sequences:
>MK004208_K1652 ID=MK004208_K1652; Name=MK004208 K1652; organism=Daucus carota; type=genetic_marker
AGGGARTGCAGGGAACTTTGGGCCAACACAGCATCCTYCACCACAGCAGA
ATTATGGTCCTCCTGGAGTTG
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
AGGGARTGCAGGGAACTTTGGGCCAACACAGCATCCT
Three Prime Flanking Region:
CACCACAGCAGAATTATGGTCCTCCTGGAGTTG
SNP:
C/T