Resource Type:
Genetic Marker
Name:
MK006110 K3554
Identifier:
MK006110_K3554
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK006110 K3554, is adjacent to primer, K3554_X. |
| The genetic_marker, MK006110 K3554, is adjacent to primer, K3554_Y. |
| The genetic_marker, MK006110 K3554, is adjacent to primer, K3554_Common. |
| The genetic_marker, MK006110 K3554, is located in gene, DCAR_029727. |
| The genetic_marker, MK006110 K3554, is located in gene, LOC108200366. |
| The marker_locus, K3554, is an instance of genetic_marker, MK006110 K3554. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 70349 NG bin map | Chr9 | 23.311 | K3554 | MapViewer |
| 2016 70349 NG full map | Chr9 | 23.311 | K3554 | MapViewer |
| 2016 70796 NG full map | Chr9 | 19.65 | K3554 | MapViewer |
| 2016 Integ NG full map | CH9 | 18.207 | K3554 | MapViewer |
| 2016 Integ NG bin map | CH9 | 20.735 | K3554 | MapViewer |
| 2014 70349 | Chromosome_9 | 23.311 | K3554 | MapViewer |
Synonyms:
- MK006110
Sequence Coordinates:
DCARv2_Chr9:12569135..12569183-
View location in JBrowse:
Sequence:
TAATCTTACTCAAAACATTACGGTACTTCTTCTTCAAKCGCCTCAACTTC
TCAACCAACTGATTCTTATTA
Sequences:
>MK006110_K3554 ID=MK006110_K3554; Name=MK006110 K3554; organism=Daucus carota; type=genetic_marker
TAATCTTACTCAAAACATTACGGTACTTCTTCTTCAAKCGCCTCAACTTC
TCAACCAACTGATTCTTATTA
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
TAATCTTACTCAAAACATTACGGTACTTCTTCTTCAA
Three Prime Flanking Region:
CGCCTCAACTTCTCAACCAACTGATTCTTATTA
SNP:
G/T