Resource Type:
Genetic Marker
Name:
MK005474 K2918
Identifier:
MK005474_K2918
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK005474 K2918, is adjacent to primer, K2918_X. |
| The genetic_marker, MK005474 K2918, is adjacent to primer, K2918_Y. |
| The genetic_marker, MK005474 K2918, is adjacent to primer, K2918_Common. |
| The genetic_marker, MK005474 K2918, is located in gene, DCAR_029965. |
| The genetic_marker, MK005474 K2918, is located in gene, LOC108203039. |
| The marker_locus, K2918, is an instance of genetic_marker, MK005474 K2918. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 Integ NG full map | CH9 | 28.703 | K2918 | MapViewer |
| 2016 70796 NG bin map | Chr9 | 31.058 | K2918 | MapViewer |
| 2016 70796 NG full map | Chr9 | 31.058 | K2918 | MapViewer |
| 2014 70349 | Chromosome_9 | 37.133 | K2918 | MapViewer |
| 2016 80592 NG full map | Chr9 | 28.926 | K2918 | MapViewer |
| 2016 70349 NG full map | Chr9 | 37.133 | K2918 | MapViewer |
| 2016 Integ NG bin map | CH9 | 30.21 | K2918 | MapViewer |
Synonyms:
- MK005474
Sequence Coordinates:
DCARv2_Chr9:18305408..18305457-
View location in JBrowse:
Sequence:
TTTTCTCCCCAAAGACAATTCCCCCAATTTCACCCGARTCTCCGACAATT
CCGACGACGATGAAGACGATG
Sequences:
>MK005474_K2918 ID=MK005474_K2918; Name=MK005474 K2918; organism=Daucus carota; type=genetic_marker
TTTTCTCCCCAAAGACAATTCCCCCAATTTCACCCGARTCTCCGACAATT
CCGACGACGATGAAGACGATG
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
TTTTCTCCCCAAAGACAATTCCCCCAATTTCACCCGA
Three Prime Flanking Region:
TCTCCGACAATTCCGACGACGATGAAGACGATG
SNP:
A/G