Resource Type:
Genetic Marker
Name:
MK004728 K2172
Identifier:
MK004728_K2172
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK004728 K2172, is adjacent to primer, K2172_X. |
| The genetic_marker, MK004728 K2172, is adjacent to primer, K2172_Y. |
| The genetic_marker, MK004728 K2172, is adjacent to primer, K2172_Common. |
| The genetic_marker, MK004728 K2172, is located in gene, DCAR_030285. |
| The genetic_marker, MK004728 K2172, is located in gene, LOC108202604. |
| The marker_locus, K2172, is an instance of genetic_marker, MK004728 K2172. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 70796 NG bin map | Chr9 | 38.443 | K2172 | MapViewer |
| 2014 70349 | Chromosome_9 | 45.492 | K2172 | MapViewer |
| 2016 70349 NG bin map | Chr9 | 45.492 | K2172 | MapViewer |
| 2016 70796 NG full map | Chr9 | 38.443 | K2172 | MapViewer |
| 2016 70349 NG full map | Chr9 | 45.492 | K2172 | MapViewer |
| 2016 Integ NG bin map | CH9 | 37.478 | K2172 | MapViewer |
| 2016 Integ NG full map | CH9 | 35.154 | K2172 | MapViewer |
Synonyms:
- MK004728
Sequence Coordinates:
DCARv2_Chr9:22933171..22933228-
View location in JBrowse:
Sequence:
AATCATCTTCAGGATTAATCACCTCCATAATCCTATCYGCAAATATCTTA
TTAACTGAAACATAAGCCTGC
Sequences:
>MK004728_K2172 ID=MK004728_K2172; Name=MK004728 K2172; organism=Daucus carota; type=genetic_marker
AATCATCTTCAGGATTAATCACCTCCATAATCCTATCYGCAAATATCTTA
TTAACTGAAACATAAGCCTGC
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
AATCATCTTCAGGATTAATCACCTCCATAATCCTATC
Three Prime Flanking Region:
GCAAATATCTTATTAACTGAAACATAAGCCTGC
SNP:
C/T