MK002165 ESSR-060 | CarrotOmics

Resource Type:

Genetic Marker

Name:

MK002165 ESSR-060

Identifier:

MK002165_ESSR_060

Organism:

Daucus carota subspecies sativus

Marker Type:

SSR

Publication:

Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 5 relationships.
Relationships
The genetic_marker, MK002165 ESSR-060, is adjacent to primer, ESSR-060-F.
The genetic_marker, MK002165 ESSR-060, is adjacent to primer, ESSR-060-R.
The genetic_marker, MK002165 ESSR-060, is located in gene, DCAR_004769.
The genetic_marker, MK002165 ESSR-060, is located in gene, LOC108210355.
The marker_locus, ESSR-060, is an instance of genetic_marker, MK002165 ESSR-060.

MapViewer Marker Map Positions:


Map Name	Linkage Group	Position	Locus	MapViewer
2011 SS1061	1061-1	0	ESSR-060	MapViewer
2016 70796 NG bin map	Chr1	66.215	ESSR-060	MapViewer
2011 SS1061QTL	1061QTL-9	0	ESSR-060	MapViewer
2016 Integ NG full map	CH1	79.379	ESSR-060	MapViewer
2016 70796 NG full map	Chr1	66.215	ESSR-060	MapViewer
2016 Integ NG bin map	CH1	80.672	ESSR-060	MapViewer

Synonyms:

MK002165

Sequence Coordinates:

DCARv2_Chr1:51102560..51102841-

View location in JBrowse:

DCARv2_Chr1:51102560..51102841-

Sequence:

GGCACTTGATGTAATGGGCTGTTTCGTCCAGTAAGCTCCTGGTATCCAGA
TCTTCACCTCCGGGAACTATTTCCCTCAGCTCTCCTGTCCAGCATGTTTC
ATTTATGGAACATCTCCTTCTTCTTCTTCGCCTGCGAATCTTGGAAAGCA
TGGCCCGGCTCCATGCCCTTCTTCCCCCCACCGTAGCGGCCATGCACATA
TTAGCAGCATGTTTGATCTCAAGGGATCTTCTTCTTCTACTCCACCACCT
GGATG

Sequences:

Primary genetic marker Sequence (255bp)

>MK002165_ESSR_060 ID=MK002165_ESSR_060; Name=MK002165 ESSR-060; organism=Daucus carota; type=genetic_marker
GGCACTTGATGTAATGGGCTGTTTCGTCCAGTAAGCTCCTGGTATCCAGA
TCTTCACCTCCGGGAACTATTTCCCTCAGCTCTCCTGTCCAGCATGTTTC
ATTTATGGAACATCTCCTTCTTCTTCTTCGCCTGCGAATCTTGGAAAGCA
TGGCCCGGCTCCATGCCCTTCTTCCCCCCACCGTAGCGGCCATGCACATA
TTAGCAGCATGTTTGATCTCAAGGGATCTTCTTCTTCTACTCCACCACCT
GGATG

This is the primary representative sequence for this feature.

Sequence Length:

255